Step 4: Load Labels (Optional)

Step 4: Load Labels (Optional)#

CellPick supports loading cell type labels for stratified selection:

  • Click “Load Labels” to import a CSV file with cell annotations

  • The CSV should contain: - A column with cell IDs (matching shape IDs or original mask IDs) - A column with label values (e.g., cell types)

  • Labels are used for: - Color-coding shapes by cell type - Stratified selection (select k cells per label)

Load labels dialog